napari
btrack
comes with a number of optional napari plugins. To install the
dependencies needed to use these plugins, install the napari
extra via.:
pip install btrack[napari]
If working on Apple Silicon then also run:
conda install -c conda-forge pyqt
The Tracks layer
We developed the Tracks
layer that is now part of the multidimensional image viewer napari – you can use this to visualize the output of btrack
:
import napari
viewer = napari.Viewer()
viewer.add_labels(segmentation)
viewer.add_tracks(data, properties=properties, graph=graph)
Read more about the tracks API at Napari’s documentation.
Visualising trees
arboretum is a separate plugin that we have developed to visualise lineage trees in napari.