Index

A

append() (btrack.BayesianTracker method)

as_ctype() (btrack.models.HypothesisModel method)

B

BayesianTracker (class in btrack) btrack module btrack.btypes module

btrack.io module btrack.models module btrack.utils module

C

candidate_graph_edges() (btrack.BayesianTracker method) close() (btrack.io.HDF5FileHandler method) configuration (btrack.BayesianTracker attribute)

configure() (btrack.BayesianTracker method) configure_from_file() (btrack.BayesianTracker method) covar() (btrack.btypes.Tracklet method)

D

dummies (btrack.BayesianTracker attribute)

dummy (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute)

E

export() (btrack.BayesianTracker method) export_CSV() (in module btrack.io)

export_delegator() (in module btrack.io) export_LBEP() (in module btrack.io)

F

features (btrack.btypes.PyTrackObject attribute) filtered_objects() (btrack.io.HDF5FileHandler method)

frame_range (btrack.BayesianTracker attribute) from_dict() (btrack.btypes.PyTrackObject static method)

H

HDF5FileHandler (class in btrack.io) hypotheses() (btrack.BayesianTracker method)

hypotheses_to_generate() (btrack.models.HypothesisModel method) HypothesisModel (class in btrack.models)

I

ID (btrack.btypes.PyTrackObject attribute) import_CSV() (in module btrack.io)

in_frame() (btrack.btypes.Tracklet method) is_leaf (btrack.btypes.Tracklet attribute) is_root (btrack.btypes.Tracklet attribute)

K

kalman (btrack.btypes.Tracklet attribute)

L

label (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute) LBEP (btrack.BayesianTracker attribute)

lbep (btrack.io.HDF5FileHandler attribute) LBEP() (btrack.btypes.Tracklet method) localizations_to_objects() (in module btrack.io)

M

module btrack btrack.btypes btrack.io btrack.models btrack.utils

MotionModel (class in btrack.models) mu() (btrack.btypes.Tracklet method)

N

n_dummies (btrack.BayesianTracker attribute)

n_features (btrack.btypes.PyTrackObject attribute) n_tracks (btrack.BayesianTracker attribute)

O

object_type (btrack.io.HDF5FileHandler attribute) object_types (btrack.io.HDF5FileHandler attribute) ObjectModel (class in btrack.models) objects (btrack.BayesianTracker attribute) (btrack.io.HDF5FileHandler attribute)

objects_from_array() (in module btrack.io) objects_from_dict() (in module btrack.io) optimise() (btrack.BayesianTracker method) optimize() (btrack.BayesianTracker method)

P

parse_array() (btrack.models.ObjectModel class method) parse_arrays() (btrack.models.MotionModel class method) parse_hypotheses() (btrack.models.HypothesisModel class method)

predicted() (btrack.btypes.Tracklet method) properties (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute) PyTrackObject (class in btrack.btypes)

R

refs (btrack.BayesianTracker attribute) (btrack.btypes.Tracklet attribute) reshape_A() (btrack.models.MotionModel class method) reshape_emission_transition() (btrack.models.ObjectModel class method) reshape_G() (btrack.models.MotionModel class method)

reshape_H() (btrack.models.MotionModel class method) reshape_P() (btrack.models.MotionModel class method) reshape_Q() (btrack.models.MotionModel class method) reshape_R() (btrack.models.MotionModel class method) reshape_start() (btrack.models.ObjectModel class method)

S

segmentation (btrack.io.HDF5FileHandler attribute) segmentation_to_objects() (in module btrack.io) set_features() (btrack.btypes.PyTrackObject method) softmax (btrack.btypes.Tracklet attribute) start (btrack.btypes.Tracklet attribute)

state (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute) states (btrack.btypes.PyTrackObject attribute) step() (btrack.BayesianTracker method) stop (btrack.btypes.Tracklet attribute)

T

t (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute) to_array() (btrack.btypes.Tracklet method) to_dict() (btrack.btypes.PyTrackObject method) (btrack.btypes.Tracklet method) to_napari() (btrack.BayesianTracker method)

track() (btrack.BayesianTracker method) track_interactive() (btrack.BayesianTracker method) Tracklet (class in btrack.btypes) tracks (btrack.BayesianTracker attribute) (btrack.io.HDF5FileHandler attribute) tree() (btrack.io.HDF5FileHandler method) trim() (btrack.btypes.Tracklet method)

U

update_segmentation() (in module btrack.utils)

V

validate_motion_model() (btrack.models.MotionModel class method)

W

write_objects() (btrack.io.HDF5FileHandler method) write_properties() (btrack.io.HDF5FileHandler method)

write_segmentation() (btrack.io.HDF5FileHandler method) write_tracks() (btrack.io.HDF5FileHandler method)

X

x (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute)

Y

y (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute)

Z

z (btrack.btypes.PyTrackObject attribute) (btrack.btypes.Tracklet attribute)